get_extreme_PIDs {YAPSA} | R Documentation |
For all signatures found in a project, this function returns the sample identifiers (PIDs) with extremely high or extremely low exposures of the respective signatures.
get_extreme_PIDs(in_exposures_df, in_quantile = 0.03)
in_exposures_df |
Data frame with the signature exposures |
in_quantile |
Quantile for the amount of extreme PIDs to be selected. |
A data frame with 4 rows per signature (high PIDs, high exposures, low PIDs, low exposures); the number of columns depends on the quantile chosen.
data(lymphoma_cohort_LCD_results) get_extreme_PIDs(lymphoma_Nature2013_COSMIC_cutoff_exposures_df,0.05)