seqVectorDinucleotideFrequency {XNAString}R Documentation

seqVectorDinucleotideFrequency function calculates frequency for strings vector

Description

seqVectorDinucleotideFrequency function calculates frequency for strings vector

Usage

seqVectorDinucleotideFrequency(unique_sets, seq_vec, as.prob)

Arguments

unique_sets

string vector of double letters -these letters pose column names

seq_vec

vector of strings (or characters) - frequency will be calculated for this vector

as.prob

logical - if TRUE frequency returned as probability of occurence

Value

matrix - each row denotes frequency for a specific string of vector

Examples

seqVectorDinucleotideFrequency(c("AB", "BA", "CD"),
                                         c("ABABAB", "ABABCD"),
                                         as.prob = FALSE)

[Package XNAString version 1.0.2 Index]