getMaxEntInfo {VarCon}R Documentation

Generates table with MaxEntScan scores per potential SA position.

Description

This function generates a table with MaxEntScan scores per potential SA position.

Usage

getMaxEntInfo(seq)

Arguments

seq

Nucleotide sequence longer than 22nt and only containing bases "A", "G", "C", "T".

Value

Dataframe of potential acceptor index positons and corresponding MaxEntScan scores.

Examples

getMaxEntInfo("TTCCAAACGAACTTTTGTAGGGA")


[Package VarCon version 1.0.0 Index]