HmmParam {VanillaICE} | R Documentation |
Contains emission probabilities, parameters for emission probabilities, and transition probabilities required for computing the most likely state path via the Viterbi algorithm
HmmParam( emission = matrix(0, 0, 0), emission_param = EmissionParam(), transition = rep(0.99, nrow(emission)), chromosome = character(nrow(emission)), loglik = LogLik(), viterbi = Viterbi(), compute_posteriors = TRUE, verbose = FALSE ) ## S4 method for signature 'HmmParam' show(object) ## S4 method for signature 'HmmParam' nrow(x) ## S4 method for signature 'HmmParam' ncol(x)
emission |
A matrix of emission probabilities |
emission_param |
an object of class |
transition |
vector of transition probabilities whose length is N-1, where N is the number of markers. User should provide the probability that the state at marker j is the same as the state at marker j-1. It is assumed that the probability of transitioning to state_j from state_j-1 is the same for all states != state_j-1. |
chromosome |
character vector |
loglik |
an object of class |
viterbi |
an object of class |
compute_posteriors |
logical |
verbose |
logical |
object |
a |
x |
a |
HmmParam()