createGeneAnnotation {UMI4Cats} | R Documentation |
Create gene annotation object
createGeneAnnotation( window, TxDb = TxDb.Hsapiens.UCSC.hg19.knownGene::TxDb.Hsapiens.UCSC.hg19.knownGene, longest = TRUE )
window |
GRanges object with coordinates to use for selecting the genes to plot. |
TxDb |
TxDb object to use for drawing the genomic annotation. |
longest |
Logical indicating whether to plot only the longest transcripts for each gene in the gene annotation plot. |
GRanges object with the gene annotation in the window.
library(TxDb.Hsapiens.UCSC.hg19.knownGene) window <- GRanges("chr16:11298262-11400036") gene_anno <- createGeneAnnotation( window = window, TxDb = TxDb.Hsapiens.UCSC.hg19.knownGene )