plotTrend {UMI4Cats} | R Documentation |
Plot adaptative smoothen trend
plotTrend(umi4c, grouping = NULL, colors = NULL, xlim = NULL, ylim = NULL)
umi4c |
|
grouping |
Grouping used for the different samples. If none available or
want to add new groupings, run |
colors |
Named vector of colors to use for plotting for each group. |
xlim |
Limits for the plot x axis (genomic coordinates). |
ylim |
Limits of the trend y axis. |
Produces the adaptative trend plot, showing average UMIs at each position taking into account the minimum number of molecules used to merge restriction fragments.
data("ex_ciita_umi4c") plotTrend(ex_ciita_umi4c)