plotGenes {UMI4Cats} | R Documentation |
Plot genes in a window of interest.
plotGenes( window, TxDb = TxDb.Hsapiens.UCSC.hg19.knownGene::TxDb.Hsapiens.UCSC.hg19.knownGene, longest = TRUE, xlim = NULL, font_size = 14 )
window |
GRanges object with coordinates to use for selecting the genes to plot. |
TxDb |
TxDb object to use for drawing the genomic annotation. |
longest |
Logical indicating whether to plot only the longest transcripts for each gene in the gene annotation plot. |
xlim |
Limits for the plot x axis (genomic coordinates). |
font_size |
Base font size to use for the UMI4C plot. Default: 14. |
Produces a plot with the genes found in the provided window
.
window <- GRanges("chr16:11348649-11349648") plotGenes( window = window, TxDb = TxDb.Hsapiens.UCSC.hg19.knownGene::TxDb.Hsapiens.UCSC.hg19.knownGene )