signatureROCplot {TBSignatureProfiler} | R Documentation |
Create an array of ROC plots to compare signatures.
signatureROCplot( inputData, annotationData, signatureColNames, annotationColName, scale = FALSE, choose_colors = c("cornflowerblue", "gray24"), name = "Signatures", nrow = NULL, ncol = NULL )
inputData |
an input data object. It should either be of the class
|
annotationData |
a |
signatureColNames |
a |
annotationColName |
a character string naming the column name in the
|
scale |
logical. Setting |
choose_colors |
a |
name |
a character string giving the title of the boxplot. The default
is |
nrow |
integer giving the number of rows in the resulting array. |
ncol |
integer giving the number of columns in the resulting array. |
An array of ROC plots.
# Run signature profiling choose_sigs <- subset(TBsignatures, !(names(TBsignatures) %in% c("Lee_4", "Roe_OD_4")))[c(1,2)] prof_indian <- runTBsigProfiler(TB_indian, useAssay = "logcounts", algorithm = "ssGSEA", signatures = choose_sigs, parallel.sz = 1) # Create ROC plots signatureROCplot(prof_indian, signatureColNames = names(choose_sigs), annotationColName = "label")