svmExternalData {SubCellBarCode} | R Documentation |
Peptide/exon/transcript centric or PTM enriched classification is applied to predict localization of them.
svmExternalData(df, modelA, modelB)
df, |
data frame fractionated additional data |
modelA, |
model for the replicate A classification |
modelB, |
model for the replicate B classification |
c.cls.df
{ df <- loadData(SubCellBarCode::hcc827Ctrl) c.prots <- calculateCoveredProtein(rownames(df), markerProteins[,1]) set.seed(7) c.prots <- sample(c.prots, 550) cls <- svmClassification(c.prots, df, markerProteins) modelA <- cls[[1]]$model modelB <- cls[[2]]$model exon.cls <- svmExternalData(SubCellBarCode::hcc827exon, modelA = modelA, modelB = modelB) }