writeSpeCondResult {SpeCond} | R Documentation |
writeSpeCondResult
produces three text files:
- The table of the gene detected as specific and in which condition they are specific (0: no specific, 1: specific up-regulated, -1:specific down-regulated). The default name is file.name.profile="specific_profile.txt".
- The list of the specific genes. The default name is: "list_specific_probeset.txt".
- The table of the unique specific profiles detected. The default name is: "specific_unique_profile.txt".
writeSpeCondResult(L.specific.result, file.name.profile = "specific_profile.txt", file.specific.gene = "list_specific_gene.txt", file.name.unique.profile = "specific_unique_profile.txt")
L.specific.result |
The |
file.name.profile |
The name of the produced file containing the gene's profiles |
file.specific.gene |
The name of the produced file containing the list of the specific genes |
file.name.unique.profile |
The name of the produced file containing the unique gene's profiles |
Florence Cavalli, florence@ebi.ac.uk
SpeCond
, getProfile
, writeUniqueProfileSpecifcResult
,
writeGeneResult
library(SpeCond) data(expressionSpeCondExample) ##Perform the condition specific detection analysis with SpeCond() generalResult=SpeCond(expressionSpeCondExample, param.detection=NULL, multitest.correction.method="BY", prefix.file="E", print.hist.pv=TRUE, fit1=NULL, fit2=NULL, specificOutlierStep1=NULL) specificResult=generalResult$specificResult ##write the SpeCond results files writeSpeCondResult(specificResult$L.specific.result,file.name.profile= "Example_specific_profile.txt", file.specific.gene="Example_list_specific_gene.txt", file.name.unique.profile="Example_specific_unique_profile.txt")