plot_network {STRINGdb} | R Documentation |
Plots an image of the STRING network with the given proteins.
## S4 method for signature 'STRINGdb' plot_network(string_ids, payload_id=NULL, required_score=NULL, add_link=TRUE, add_summary=TRUE)
string_ids |
a vector of STRING identifiers |
payload_id |
an identifier of payload data on the STRING server (see method post_payload for additional informations) |
required_score |
a threshold on the score that overrides the default score_threshold, that we use only for the picture |
add_link |
parameter to specify whether you want to generate and add a short link to the relative page in STRING. As default this option is active but we suggest to deactivate it in case one is generating many images (e.g. in a loop). Deactivating this option avoids to generate and store a lot of short-urls on our server. |
add_summary |
parameter to specify whether you want to add a summary text to the picture. This summary includes a p-value and the number of proteins/interactions. |
Andrea Franceschini