getVAF {STATegRa} | R Documentation |
Generic function to retrieve VAF found by omicsCompAnalysis
on a caClass-class
object.
getVAF(x, part=NULL, block=NULL)
x |
|
part |
Character indicating whether "common" or "distinctive" VAF should be displayed |
block |
Character indicating the block of data for which the VAF will be given. It can be specified by the position of the block ("1" or "2") or the name assigned in the |
A list containing the requested information.
Patricia Sebastian-Leon
omicsCompAnalysis
, caClass-class
data("STATegRa_S3") B1 <- createOmicsExpressionSet(Data=Block1.PCA, pData=ed.PCA, pDataDescr=c("classname")) B2 <- createOmicsExpressionSet(Data=Block2.PCA, pData=ed.PCA, pDataDescr=c("classname")) # Omics components analysis res <- omicsCompAnalysis(Input=list(B1, B2), Names=c("expr", "mirna"), method="DISCOSCA", Rcommon=2, Rspecific=c(2, 2), center=TRUE, scale=TRUE, weight=TRUE) getVAF(res) getVAF(res, part="common") getVAF(res, part="distinctive", block="expr")