fn_gene_miRNA_F_test {SPONGE}R Documentation

Perform F test for gene-miRNA elastic net model

Description

Perform F test for gene-miRNA elastic net model

Usage

fn_gene_miRNA_F_test(g_expr, m_expr, model, p.adj.threshold = NULL)

Arguments

g_expr

A gene expression matrix with samples in rows and genes in columns

m_expr

A miRNA expression matrix with samples in rows and genes in columns. Sample number and order has to agree with above gene expression matrix

model

A nested elastic net model to be tested

p.adj.threshold

Threshold for FDR corrected p-value

Value

return data frame with miRNA, fstat and adjusted p.value (BH).


[Package SPONGE version 1.14.0 Index]