findTX {SPLINTER}R Documentation

findTX

Description

Given an ENSEMBL id, find all transcripts that matches id

Usage

findTX(id, db, tx, valid = FALSE, verbose = FALSE)

Arguments

id

character. transcript identification (currently ENSEMBL gene names)

db

TxDb object

tx

GRangesList

valid

logical. check if in multiples of 3 [TRUE] for CDS translation.

verbose

logical. turn messages on/off.

Value

GRangesList

Author(s)

Diana Low

Examples

valid_cds <-findTX(id=splice_data$data[2,]$ID,tx=thecds,db=txdb,valid=FALSE)

[Package SPLINTER version 1.18.0 Index]