selex.summary {SELEX} | R Documentation |
This function returns the summaries of either all the calculated count tables, Markov models, and information gain values in the current working directory or those for a specific sample.
selex.summary(sample=NULL, displayFilter=FALSE)
sample |
A sample handle to the sample for which summaries should be returned. |
displayFilter |
Display all applied sequence filter attributes. |
selex.summary
returns a list containing the following components:
countSummary |
a data frame containing the sample, kmer length, offset, minimum/maximum count, total count, and applied filters for either all count tables or a specified sample in the current working directory. |
markovModel |
a data frame containing the sample, order, Markov model type, R^2 value, cross validation sample/length, and applied filters for either all computed Markov models or a specified sample in the current working directory. |
informationGain |
a data frame containing the sample, Kmer length, information gain value, Markov model/type, and applied filters for either all computed information gain values or a specified sample in the current working directory. |
selex.counts
, selex.countSummary
, selex.infogain
, selex.infogainSummary
, selex.mm
, selex.mmSummary
selex.summary()