organise_de_genes {SC3}R Documentation

Get differentiall expressed genes from an object of SingleCellExperiment class

Description

This functions returns all marker gene columns from the phenoData slot of the input object corresponding to the number of clusters k. Additionally, it rearranges genes by the cluster index and order them by the area under the ROC curve value inside of each cluster.

Usage

organise_de_genes(object, k, p_val)

Arguments

object

an object of SingleCellExperiment class

k

number of cluster

p_val

p-value threshold


[Package SC3 version 1.20.0 Index]