sc3_plot_de_genes {SC3} | R Documentation |
SC3
as a heatmapSC3
plots gene expression profiles of the 50 genes with the lowest p-values.
sc3_plot_de_genes.SingleCellExperiment(object, k, p.val, show_pdata) ## S4 method for signature 'SingleCellExperiment' sc3_plot_de_genes(object, k, p.val = 0.01, show_pdata = NULL)
object |
an object of 'SingleCellExperiment' class |
k |
number of clusters |
p.val |
significance threshold used for the DE genes |
show_pdata |
a vector of colnames of the pData(object) table. Default is NULL. If not NULL will add pData annotations to the columns of the output matrix |