rqcCycleBaseCallsCalc {Rqc} | R Documentation |
Creates a bar graph of per cycle base calls.
rqcCycleBaseCallsCalc(rqcResultSet) rqcCycleBaseCallsLinePlot(rqcResultSet) rqcCycleBaseCallsPlot(rqcResultSet)
rqcResultSet |
list of |
Plot object from ggplot
function.
rqcCycleBaseCallsCalc
: calculates necessary statistics
rqcCycleBaseCallsLinePlot
: creates a line graph
Welliton Souza
checkpoint("Rqc", path=system.file(package="Rqc", "extdata"), { folder <- system.file(package="ShortRead", "extdata/E-MTAB-1147") files <- list.files(full.names=TRUE, path=folder) rqcResultSet <- rqcQA(files, pair=c(1,1), workers=1) }, keep="rqcResultSet") rqcCycleBaseCallsPlot(rqcResultSet)