rqcCycleAverageQualityPcaCalc {Rqc} | R Documentation |
This function creates a Biplot of PCA of per cycle read average quality
rqcCycleAverageQualityPcaCalc(rqcResultSet) rqcCycleAverageQualityPcaPlot(rqcResultSet)
rqcResultSet |
list of |
Plot object from ggplot
function.
rqcCycleAverageQualityPcaCalc
: calculates necessary statistics
Welliton Souza
checkpoint("Rqc", path=system.file(package="Rqc", "extdata"), { folder <- system.file(package="ShortRead", "extdata/E-MTAB-1147") files <- list.files(full.names=TRUE, path=folder) rqcResultSet <- rqcQA(files, pair=c(1,1), workers=1) }, keep="rqcResultSet") rqcCycleAverageQualityPcaPlot(rqcResultSet)