intensities.by.color {RnBeads} | R Documentation |
Rearranges information from "M" and "U" slots of a RnBeadsRawSet object by color channel.
intensities.by.color( raw.set, address.rownames = TRUE, add.oob = all(!is.null(M0(raw.set)), !is.null(U0(raw.set))), add.controls = !is.null(qc(raw.set)), add.missing = TRUE, re.separate = FALSE )
raw.set |
Methylation dataset as an instance of |
address.rownames |
if |
add.oob |
if |
add.controls |
if |
add.missing |
if |
re.separate |
if |
A list
with elements Cy3
and Cy5
containing average bead intensities measured for each
each probe in the green and red channels, respectively. Exception, if re.separate
is TRUE
a list
with elements Cy3.I
, Cy5.I
, and II
will be returned. The elements Cy3.I.oob
,
Cy5.I.oob
and also Cy3.ctl
, Cy5.ctl
will be returned
if the respective parameters (add.oob
and add.ctl
) are set to true.
Pavlo Lutsik, Nathan Steenbuck