read.GS.report {RnBeads} | R Documentation |
Reads in a Genome Studio report, exported as a single file.
read.GS.report( gsReportFile, pd = NULL, sep = rnb.getOption("import.table.separator"), keep.methylumi = FALSE, verbose = TRUE )
gsReportFile |
location of the GS report file |
pd |
alternative sample annotation, if the |
sep |
character used as field separator in the sample sheet file and in the GS report file
(should be identical).
Default value is taken by the call to |
keep.methylumi |
a flag indicating whether the a |
verbose |
Flag indicating ifthe messages to the logger should be sent. Note that the logger must be initialized prior to calling this function. Logging is useful for keeping a record of the downloaded and processed samples. Also, informative messages are stored in case of an error. |
MethylumiSet object with the data from the report