rnb.execute.cross.reactive.removal {RnBeads} | R Documentation |
Removes all probes defined as cross-reactive from the given dataset.
rnb.execute.cross.reactive.removal(rnb.set)
rnb.set |
Methylation dataset as an object of type inheriting |
list
of four elements:
"dataset.before"
Copy of rnb.set
.
"dataset"
The (possibly) modified dataset object after removing probes that have a high likelihood of cross-hybridization.
"filtered"
integer
vector storing the indices (in beta matrix of the unfiltered
dataset) of all removed probes.
Yassen Assenov
library(RnBeads.hg19) data(small.example.object) rnb.set.filtered <- rnb.execute.cross.reactive.removal(rnb.set.example)$dataset identical(meth(rnb.set.example), meth(rnb.set.filtered)) # FALSE