searchQuery {ReactomeContentService4R} | R Documentation |
Search for Reactome objects by name or identifiers.
searchQuery( query, species = NULL, types = NULL, compartments = NULL, keywords = NULL, cluster = TRUE, range = NULL )
query |
name or dbId or stId of a search term from any class |
species |
name or taxon id or dbId or abbreviation of species |
types |
type filter, such as "Protein", "Complex", "Reaction", etc |
compartments |
compartment filter, such as "cytosol", "plasma membrane", "nucleoplasm", etc |
keywords |
keyword filter, such as "binds", "phosphorylates", "transports", etc |
cluster |
cluster returned data or not |
range |
start row and the number of rows to include, e.g. |
a list of information about the search term
listSearchItems
for available filters
searchQuery(query="Biological oxidation", species="Mus musculus", types=c("Pathway", "Reaction"))