tni.regulon.summary {RTN} | R Documentation |
This function takes a TNI object and optionally a list of regulatory elements and returns a summary of the network (if no regulatory elements are given) or of the chosen regulon or regulons.
tni.regulon.summary(object, regulatoryElements = NULL, verbose = TRUE)
object |
a preprocessed object of class 'TNI' |
regulatoryElements |
a vector of valid regulatory elements (e.g. transcription factors). |
verbose |
a single logical value specifying to display detailed messages (when verbose=TRUE) or not (when verbose=FALSE). |
It returns a print-out of the network summary (if verbose is TRUE) and invisibly returns a data.frame of network characteristics such as regulon size and regulon balance.
Clarice Groeneveld
data(tniData) ## Not run: rtni <- tni.constructor(expData=tniData$expData, regulatoryElements=c("PTTG1","E2F2","FOXM1","E2F3","RUNX2"), rowAnnotation=tniData$rowAnnotation) rtni <- tni.permutation(rtni) rtni <- tni.bootstrap(rtni) rtni <- tni.dpi.filter(rtni) # Summary of the network tni.regulon.summary(rtni) # Summary of a regulon tni.regulon.summary(rtni, regulatoryElements = "PTTG1") ## End(Not run)