plotPosteriors {RIVER}R Documentation

Draw scatter plots of posterior probabilities from both RIVER GAM in terms of outlier status.

Description

plotPosteriors draws scatter plots of posterior probabilities from both RIVER GAM (genomic annotation model) in terms of outlier status.

Usage

plotPosteriors(postprobs, outliers)

Arguments

postprobs

Output of evaRIVER, which provides test posterior probabilities from both RIVER and GAM for all instances.

outliers

Outlier status of examples

Value

A figure of posteriors from RIVER (y-axis) and GAM (x-axis) models for ouliters and non-outliers separately

Author(s)

Yungil Kim, ipw012@gmail.com

Examples

dataInput <- getData(filename=system.file("extdata", "simulation_RIVER.gz",
        package = "RIVER"), ZscoreThrd=1.5)
postprobs <- appRIVER(dataInput)
plotPosteriors(postprobs, outliers=as.numeric(unlist(dataInput$Outlier))-1)


[Package RIVER version 1.16.0 Index]