RCSL {RCSL} | R Documentation |
Perform the RCSL program
RCSL( data, GF = TRUE, gfRatio = 0.025, pcRatio = 0.95, NN.method = "KNN", Dis.method = "Euclidean", neiRatio = 0.65 )
data |
normalizaed gene expression matrix(each column represents a cell) |
GF |
should I need the gene filter step? |
gfRatio |
the ratio of the gene filter |
pcRatio |
the ratio between the variance of the |
NN.method |
the method of finding neighbors |
Dis.method |
the distance metric in finding neighbors |
neiRatio |
ratio of the number of selected |
gfData gene expression matrix after genes filtering
B block-diagonal matrix
C estimated number of clusters
y clustering results
data(yan) data <- log2(yan+1) RCSL(yan[,1:20])