baseFrequency {R453Plus1Toolbox} | R Documentation |
This function returns the absolute and the relative frequency of the four bases (A, C, G, T).
baseFrequency(object)
object |
An object of class DNAStringSet, ShortRead or SFFContainer. |
This function makes use of the alphabetFrequency function from package
Biostrings
.
A data.frame with two columns containing the absolute and relative frequencies respectively and six rows, one for each of the four bases (A, C, G, T), one for other symbols contained in the reads and one summarizing the five aforementioned rows.
Christian Ruckert