result_PFP-methods {PFP}R Documentation

result of the PFP object.

Description

get the result of the PFP object.

Usage

result_PFP(object, thresh_slot = NULL, thresh_value = 0.05)

## S4 method for signature 'PFP'
result_PFP(object, thresh_slot = NULL, thresh_value = 0.05)

Arguments

object,

PFP class

thresh_slot,

a character, it could be 'p_value' or 'p_adj_value', it means the threshold slot to choose for select the significant pathway. Default is NULL,it means that you don't want to select the significant pathway and you will select all pathways.

thresh_value,

a numeric, threshold value of 'p_value' or 'p_adjust_value' for pathway selection,Default is 0.05.

Value

the scores and the information of PFP object.

See Also

PFP-class

Examples

data(PFP_test1)
result_PFP(PFP_test1,
        thresh_slot="p_adj_value",
        thresh_value = 0.05)

[Package PFP version 1.0.0 Index]