trainModel,NCSModel-method {PDATK} | R Documentation |
Train a NetworkCommunitySearchModel
Description
Train a NetworkCommunitySearchModel
Usage
## S4 method for signature 'NCSModel'
trainModel(object, alpha = 0.05, minRepro = 0.5, minCor = 0)
Arguments
object |
An NCSModel object, created from a
ConsensusMetaclusteringModel .
|
alpha |
A float specifying the significance level for cluster
reproducibility. Default is 0.05.
|
minRepro |
A float specifying the minimum in-group proportion (IGP)
for a cluster to be included in the metacluster labels. Default is 0.5.
|
minCor |
A float specifying the minimum correlation between a
centroid and assay cluster to be included in the metacluster labels.
Default is 0.0.
|
Value
The NCSModel
from object
with the networkEdges
item of the
models
slot fitlered based on the specified criteria. The criteria are
also stored in the modelParam
slots to ensure reproducibility.
[Package
PDATK version 1.0.2
Index]