findHealthy {Onassis} | R Documentation |
findHealthy
findHealthy annotates as 'Healthy' the samples whose metadata matches with one of the elements of a list of sentence used to describe the normal disease state or healthy.
findHealthy(metadata_df)
metadata_df |
a data frame where the first column corresponds to the identifier of a sample #' and the other columns the metadata relative to the sample |
a data frame with healthy samples annotated as 'Healthy'
metadatafile <- readRDS(system.file('extdata', 'vignette_data', 'GEO_human_chip.rds', package='Onassis')) healthy_gsms <- findHealthy(metadatafile)