get_signed_ptms {OmnipathR} | R Documentation |
Enzyme-substrate data does not contain sign (activation/inhibition), we generate this information based on the interaction network.
get_signed_ptms( enzsub = import_omnipath_enzsub(), interactions = import_omnipath_interactions() )
enzsub |
Enzyme-substrate data frame generated by
|
interactions |
interaction data frame generated by
|
Data frame of enzyme-substrate relationships with is_inhibition and is_stimulation columns.
enzsub <- import_omnipath_enzsub(resources = c('PhosphoSite', 'SIGNOR')) interactions <- import_omnipath_interactions() enzsub <- get_signed_ptms(enzsub, interactions)