trrust_download {OmnipathR} | R Documentation |
TRRUST v2 (https://www.grnpedia.org/trrust/) is a database of literature mined TF-target interactions for human and mouse.
trrust_download(organism = "human")
organism |
Character: either "human" or "mouse". |
A data frame of TF-target interactions.
trrust_interactions <- trrust_download() trrust_interactions # # A tibble: 11,698 x 4 # source_genesymbol target_genesymbol effect reference # <chr> <chr> <dbl> <chr> # 1 AATF BAX -1 22909821 # 2 AATF CDKN1A 0 17157788 # 3 AATF KLK3 0 23146908 # 4 AATF MYC 1 20549547 # 5 AATF TP53 0 17157788 # 6 ABL1 BAX 1 11753601 # 7 ABL1 BCL2 -1 11753601 # # . with 11,688 more rows