nichenet_lr_network_ramilowski {OmnipathR} | R Documentation |
Downloads ligand-receptor interactions from Supplementary Table 2 of the paper 'A draft network of ligand–receptor-mediated multicellular signalling in human' (Ramilowski et al. 2015, https://www.nature.com/articles/ncomms8866). It converts the downloaded table to a format suitable for NicheNet.
nichenet_lr_network_ramilowski( evidences = c("literature supported", "putative") )
evidences |
Character: evidence types, "literature supported", "putative" or both. |
Data frame with ligand-receptor interactions in NicheNet format.
# use only the literature supported data: rami_lr_network <- nichenet_lr_network_ramilowski( evidences = 'literature supported' )