htridb_download {OmnipathR} | R Documentation |
HTRIdb (https://www.lbbc.ibb.unesp.br/htri/) is a database of literature curated human TF-target interactions. As the database is recently offline, the data is distributed by the OmniPath rescued data repository (https://rescued.omnipathdb.org/).
htridb_download()
Data frame (tibble) with interactions.
htridb_data <- htridb_download() htridb_data # # A tibble: 18,630 x 7 # OID GENEID_TF SYMBOL_TF GENEID_TG SYMBOL_TG TECHNIQUE # <dbl> <dbl> <chr> <dbl> <chr> <chr> # 1 32399 142 PARP1 675 BRCA2 Electrophoretic Mobi. # 2 32399 142 PARP1 675 BRCA2 Chromatin Immunoprec. # 3 28907 196 AHR 1543 CYP1A1 Chromatin Immunoprec. # 4 29466 196 AHR 1543 CYP1A1 Electrophoretic Mobi. # 5 28911 196 AHR 1543 CYP1A1 Chromatin Immunoprec. # # . with 18,620 more rows, and 1 more variable: PUBMED_ID <chr>