permfunc {OVESEG}R Documentation

Internal function for one permutation task

Description

Internal function for one permutation task

Usage

permfunc(p, y, group, weights, alpha, combM, geneSubset, seeds)

Arguments

p

an integer indicating permutation index

y

an expressions matrix

group

a integer vector indicating group labels

weights

optional numeric matrix containing prior weights

alpha

parameter specifying within-group variance estimator to be used

combM

a integer matrix with each row giving one choice of M groups

geneSubset

a integer vector indicating the probe pattern of combM

seed

an integer seed for the random number generator

Value

test statistics and upregulated group indexes after one permutaion


[Package OVESEG version 1.8.0 Index]