install.sratoolkit {ORFik} | R Documentation |
Currently supported for Linux (64 bit centos and ubunutu is tested to work) and Mac-OS(64 bit)
install.sratoolkit(folder = "~/bin", version = "2.10.9")
folder |
default folder, "~/bin" |
version |
a string, default "2.10.9" |
path to fastq-dump in sratoolkit
https://ncbi.github.io/sra-tools/fastq-dump.html
Other sra:
download.SRA.metadata()
,
download.SRA()
,
download.ebi()
,
rename.SRA.files()
# install.sratoolkit() ## Custom folder and version folder <- "/I/WANT/IT/HERE/" # install.sratoolkit(folder, version = "2.10.7")