plot_density {OMICsPCA} | R Documentation |
This function displays density of individuals
plot_density(name, Assay, PC = 1, groups, groupinfo = NULL, ...)
name |
Name of the "PCA" object containing the assay data |
Assay |
Name of an Assay |
PC |
A number corresponding to the principal component on which density is to be calculated |
groups |
A vector of names or subset of names of groups |
groupinfo |
same as integrate_variables() |
... |
additional arguments of base function "geom_density" from package "ggplot2" |
a "gg" "ggplot" object
Subhadeep Das <subhadeep1024@gmail.com>
PCAlist <- integrate_variables(Assays = c("H2az","H3k4me1", "H3k9ac"), name = multi_assay, groups = c("WE","RE"), groupinfo = groupinfo_ext, scale.unit = FALSE, graph = FALSE) densityplot <- plot_density(name = PCAlist, Assay = "H2az", groupinfo = groupinfo_ext, PC = 1, groups = c("WE","RE"), adjust = 1)