writeNormalizedDatasets {NormalyzerDE} | R Documentation |
Outputs each of the normalized datasets to the specified directory.
writeNormalizedDatasets( nr, jobdir, includePairwiseComparisons = FALSE, includeCvCol = FALSE, includeAnovaP = FALSE, normSuffix = "-normalized.txt", rawdataName = "submitted_rawdata.txt" )
nr |
Results object. |
jobdir |
Path to output directory. |
includePairwiseComparisons |
Include p-values for pairwise comparisons. |
includeCvCol |
Include CV column in output. |
includeAnovaP |
Include ANOVA p-value in output. |
normSuffix |
String used to name output together with normalization names. |
rawdataName |
Name of output raw data file. |
None
data(example_summarized_experiment) normObj <- getVerifiedNormalyzerObject("job_name", example_summarized_experiment) normResults <- normMethods(normObj) normResultsWithEval <- analyzeNormalizations(normResults) outputDir <- tempdir() writeNormalizedDatasets(normResultsWithEval, outputDir)