bsseq_to_log_methy_ratio {NanoMethViz} | R Documentation |
Creates a log-methylation-ratio matrix from a BSseq object that is useful for dimensionality reduction plots.
bsseq_to_log_methy_ratio(bsseq, prior_count = 2)
bsseq |
the BSseq object. |
prior_count |
the prior count added to avoid taking log of 0. |
a matrix containing log-methylation-ratios.
methy <- system.file("methy_subset.tsv.bgz", package = "NanoMethViz") bsseq <- methy_to_bsseq(methy) log_m_ratio <- bsseq_to_log_methy_ratio(bsseq)