plot_agg_regions_sample_grouped {NanoMethViz} | R Documentation |
Plot aggregate regions with grouped samples
plot_agg_regions_sample_grouped( x, regions, flank = 2000, stranded = TRUE, span = 0.05, palette = ggplot2::scale_colour_brewer(palette = "Set1") )
x |
the NanoMethResult object. |
regions |
a table of regions or GRanges, or a list of such objects. The table of regions must contain chr, strand, start and end columns. |
flank |
the number of flanking bases to add to each side of each region. |
stranded |
TRUE if negative strand features should have coordinates flipped to reflect features like transcription start sites. |
span |
the span for loess smoothing. |
palette |
the colour palette used for samples. |
a ggplot object containing the aggregate methylation trend.
nmr <- load_example_nanomethresult() gene_anno <- exons_to_genes(NanoMethViz::exons(nmr)) plot_agg_regions_sample_grouped(nmr, gene_anno)