plot_grange_heatmap {NanoMethViz}R Documentation

Plot GRanges heatmap

Description

Plot GRanges heatmap

Usage

plot_grange_heatmap(
  x,
  grange,
  pos_style = c("to_scale", "compact"),
  window_prop = 0.3
)

Arguments

x

the NanoMethResult object.

grange

the GRanges object with one entry.

pos_style

the style for plotting the base positions along the x-axis. Defaults to "to_scale", plotting (potentially) overlapping squares along the genomic position to scale. The "compact" options plots only the positions with measured modification.

window_prop

the size of flanking region to plot. Can be a vector of two values for left and right window size. Values indicate proportion of gene length.

Value

a ggplot plot containing the heatmap.

Examples

nmr <- load_example_nanomethresult()
gr <- GenomicRanges::GRanges(data.frame(chr = "chr7", start = 6703892, end = 6730431))
plot_grange_heatmap(nmr, gr[1, ])


[Package NanoMethViz version 1.2.0 Index]