methy_to_bsseq {NanoMethViz} | R Documentation |
Create BSSeq object from methylation tabix file
methy_to_bsseq(methy, out_folder = tempdir(), verbose = TRUE)
methy |
the path to the methylation tabix file. |
out_folder |
the folder to store intermediate files. One file is created for each sample and contains columns "chr", "pos", "total" and "methylated". |
verbose |
TRUE if progress messages are to be printed |
a BSSeq object.
methy <- system.file("methy_subset.tsv.bgz", package = "NanoMethViz") bsseq <- methy_to_bsseq(methy)