NBSpliceRes-getters {NBSplice} | R Documentation |
Obtain information about NBSpliceRes slots, according to the given function call.
results(object, filter = TRUE) ## S4 method for signature 'NBSpliceRes' results(object, filter = TRUE) contrast(object) ## S4 method for signature 'NBSpliceRes' contrast(object) ## S4 method for signature 'NBSpliceRes' lowExpIndex(object) disp(object) ## S4 method for signature 'NBSpliceRes' disp(object)
object |
NBSpliceRes class object. |
filter |
Logical indicating if low expressed isoforms should be filtered out. |
according to the call one of the following objects can be returned
data.frame |
NBTest results. |
numeric |
Index of low expressed isoforms. |
character |
Experiment contrast. |
numeric |
Estimated gene dispersion. |
see full example in NBSpliceRes-class
Gabriela A. Merino merino.gabriela33@gmail.com and Elmer A. Fernandez efernandez@bdmg.com.ar
data(myDSResults, package="NBSplice") ## Getting results slot filtering the low expressed isoforms myResults<-results(myDSResults) ## Getting results slot keeping the low expressed isoforms myResults<-results(myDSResults, filter=FALSE) ## Getting the contrast slot myContrast<-contrast(myDSResults) ## Getting the lowExpIndex slot myLowExpIndex<-lowExpIndex(myDSResults) ## Getting the dispersion slot myDispersion<-disp(myDSResults)