check_no_chr_bp {MungeSumstats}R Documentation

Ensure that CHR and BP are missing if SNP is present, can find them

Description

Ensure that CHR and BP are missing if SNP is present, can find them

Usage

check_no_chr_bp(sumstats_dt, path, ref_genome, rsids)

Arguments

sumstats_dt

data table obj of the summary statistics file for the GWAS

path

Filepath for the summary statistics file to be formatted

ref_genome

name of the reference genome used for the GWAS (GRCh37 or GRCh38)

rsids

datatable of snpsById, filtered to SNPs of interest if loaded already. Or else NULL

Value

A list containing two data tables:


[Package MungeSumstats version 1.0.1 Index]