check_n_num {MungeSumstats} | R Documentation |
Incase some SNPs were genotyped by a specialized genotyping array and have substantially more samples than others. These will be removed.
check_n_num(sumstats_dt, path, N_std)
sumstats_dt |
data table obj of the summary statistics file for the GWAS |
path |
Filepath for the summary statistics file to be formatted |
N_std |
numeric The number of standard deviations above the mean a SNP's N is needed to be removed. Default is 5. |
list containing sumstats_dt, the modified summary statistics data table object