check_no_allele {MungeSumstats} | R Documentation |
More care needs to be taken if one of A1/A2 is present, before imputing the other allele flipping needs to be checked
check_no_allele(sumstats_dt, path, ref_genome, rsids)
sumstats_dt |
data table obj of the summary statistics file for the GWAS |
path |
Filepath for the summary statistics file to be formatted |
ref_genome |
name of the reference genome used for the GWAS (GRCh37 or GRCh38) |
rsids |
datatable of snpsById, filtered to SNPs of interest if loaded already. Or else NULL |
A list containing two data tables:
sumstats_dt
: the modified summary statistics data table object
rsids
: snpsById, filtered to SNPs of interest if loaded already. Or else NULL