check_info_score {MungeSumstats}R Documentation

Ensure all SNPs have info score above threshold

Description

Ensure all SNPs have info score above threshold

Usage

check_info_score(sumstats_dt, path, INFO_filter)

Arguments

sumstats_dt

data table obj of the summary statistics file for the GWAS

path

Filepath for the summary statistics file to be formatted

INFO_filter

integer The minimum value permissible of the imputation information score (if present in sumstatsfile). Default 0.9

Value

list containing sumstats_dt, the modified summary statistics data table object


[Package MungeSumstats version 1.0.1 Index]