check_no_snp {MungeSumstats} | R Documentation |
Ensure that SNP is present if not can find it with CHR and BP
check_no_snp(sumstats_dt, path, ref_genome, verbose = TRUE)
sumstats_dt |
data table obj of the summary statistics file for the GWAS |
path |
Filepath for the summary statistics file to be formatted |
ref_genome |
name of the reference genome used for the GWAS (GRCh37 or GRCh38) |
verbose |
should messages be printed. Default it TRUE. |
list containing sumstats_dt, the modified summary statistics data table object