check_strand_ambiguous {MungeSumstats} | R Documentation |
Remove SNPs with strand-ambiguous alleles
check_strand_ambiguous(sumstats_dt, path, ref_genome, strand_ambig_filter)
sumstats_dt |
data table obj of the summary statistics file for the GWAS |
path |
Filepath for the summary statistics file to be formatted |
ref_genome |
name of the reference genome used for the GWAS (GRCh37 or GRCh38). Default is GRCh37. |
strand_ambig_filter |
Binary Should SNPs with strand-ambiguous alleles be removed. Default is FALSE |
list containing sumstats_dt, the modified summary statistics data table object