check_chr {MungeSumstats} | R Documentation |
Ensure all SNPs on specified chromosomes are removed
check_chr(sumstats_dt, path, rmv_chr)
sumstats_dt |
data table obj of the summary statistics file for the GWAS |
path |
Filepath for the summary statistics file to be formatted |
rmv_chr |
vector or character The chromosomes on which the SNPs should be removed. Use NULL if no filtering necessary. Default is X, Y and mitochondrial. |
list containing sumstats_dt, the modified summary statistics data table object