selectBestAndMean {ModCon} | R Documentation |
From all sequences of a generation report highest HZEI integral and mean HZEI integral of all.
selectBestAndMean(sequenceVector, clusterName, increaseHZEI=TRUE)
sequenceVector |
Character vector of nucleotide sequences |
clusterName |
Name of cluster generated with package parallel |
increaseHZEI |
Logical value if HZEI integral should be increased or decreased during SD degradation. If TRUE, function aims to increase HZEI integral. |
Numeric vector of length 2 stating the best HZEI integral and the mean HZEI integral of a nucleotide sequence vector sequenceVector
. Depending on the increaseHZEI
mode, the best HZEI integral value is either the highest (for increaseHZEI
==TRUE) or lowest (for increaseHZEI
==FALSE).
## Setup cluster library(parallel) nCores <- 1 clust <- makeCluster(nCores) clusterExport(clust, list('getOverlappingVectorsFromVector', 'hex', 'calculateHZEIint'), envir = environment()) selectBestAndMean(c('CGCGATACGCTAAGCGCTACCGATAGTGGA','TGGGATATTTTAAGCGCTGACGATAGTGGA'), clust, increaseHZEI=TRUE)