nbOccInComp_simple {MineICA} | R Documentation |
For each feature/gene, this function returns the indices of the components they contribute to.
nbOccInComp_simple(icaSet, params, selectionByComp = NULL, level = c("features", "genes"))
icaSet |
An object of class |
params |
An object of class
|
selectionByComp |
The list of components already restricted to the contributing features/genes (each element is a vector of projection values indexed by features or genes). |
level |
The attribute of |
Returns a data.frame whose columns are: gene
the
feature or gene IDs, nbOcc
the number of
components the gene contributes to, components
the
indices of those components.
Anne Biton
data(icaSetCarbayo) params <- buildMineICAParams(resPath="carbayo/") nbOcc <- MineICA:::nbOccInComp_simple(icaSet=icaSetCarbayo, params=params, level="genes")