Maf-class {MesKit} | R Documentation |
Maf class.
data
data.table of MAF file containing somatic mutations.
sample.info
data.frame of sample information per patient.
nonSyn.vc
list of variant classifications which are considered as non-silent. Default NULL, use Variant Classifications with "Frame_Shift_Del", "Frame_Shift_Ins", "Splice_Site", "Translation_Start_Site", "Nonsense_Mutation", "Nonstop_Mutation", "In_Frame_Del", "In_Frame_Ins", "Missense_Mutation"
ref.build
human reference genome version. Default 'hg19'. Optional: 'hg18' or 'hg38'.