getCCFMatrix {MesKit} | R Documentation |
getCCFMatrix
getCCFMatrix(object) ## S4 method for signature 'phyloTree' getCCFMatrix(object)
object |
An object of phyloTree |
CCF matrix of phyloTree
maf.File <- system.file("extdata/", "CRC_HZ.maf", package = "MesKit") clin.File <- system.file("extdata/", "CRC_HZ.clin.txt", package = "MesKit") ccf.File <- system.file("extdata/", "CRC_HZ.ccf.tsv", package = "MesKit") maf <- readMaf(mafFile=maf.File, clinicalFile = clin.File, ccfFile=ccf.File, refBuild="hg19") phyloTree <- getPhyloTree(maf) getCCFMatrix(phyloTree$V402)