.summarizeTMT {MSstatsTMT} | R Documentation |
Performs summarization for TMT data
.summarizeTMT( input, method, annotation, impute, max_quantile_censored, log_file_path )
input |
data.table |
method |
"mstats"/"MedianPolish"/"LogSum"/"Median" |
annotation |
data.table with run and channel annotation |
impute |
only for method="msstats". TRUE (default) imputes missing values by Accelated failure model. FALSE uses minimum value to impute the missing value for each peptide precursor ion. |
max_quantile_censored |
We assume missing values are censored. maxQuantileforCensored is Maximum quantile for deciding censored missing value, for instance, 0.999. Default is Null. |
log_file_path |
path to a MSstats log file |
data.table