msnidObj {MSnID} | R Documentation |
MSnID object from c_elegans_A_3_1_21Apr10_Draco_10-03-04_msgfplus.mzid.gz dataset from PeptideAltas repository id PASS00308.
data(c_elegans)
data(c_elegans) msnidObj ## Not run: ## How to download the example mzID file from PeptideAltas: try(setInternet2(FALSE),silent=TRUE) ftp.loc <- "ftp://PASS00308:PJ5348t@ftp.peptideatlas.org/MSGFPlus_Results/MZID_Files/c_elegans_A_3_1_21Apr10_Draco_10-03-04_msgfplus.mzid.gz" download.file(ftp.loc, "c_elegans.mzid.gz") ## End(Not run) ## Not run: ## Script for generation of the C. elegans example data: msnidObj <- MSnID(".") mzids <- system.file("extdata","c_elegans.mzid.gz",package="MSnID") msnidObj <- read_mzIDs(msnidObj, mzids) save(msnidObj, file='c_elegans.RData', compress='xz', compression_level=9) # MD5 sum for the file is: a7c511a6502a6419127f1e46db48ed92 digest::digest(msnidObj) # clean up the cache directory unlink(".Rcache", recursive=TRUE) ## End(Not run)