PlotPTM {MQmetrics}R Documentation

Post Translational Modifications

Description

Post Translational Modifications

Usage

PlotPTM(
  MQCombined,
  peptides_modified = 1,
  plot_unmodified_peptides = FALSE,
  log_base = 2,
  palette = "Set2",
  plots_per_page = 5
)

Arguments

MQCombined

Object list containing all the files from the MaxQuant output. It is the result from using make_MQCombined.

peptides_modified

Minimum number of peptides modified. Default is 5.

plot_unmodified_peptides

If TRUE, it will show the Unmodified peptides.

log_base

The logarithmic scale for the intensity. Default is 2.

palette

The palette from the Package RColorBrewer. By default is 'Set2'.

plots_per_page

Establish the maximum number of plots per page.

Value

Two plots per sample

Examples

MQPathCombined <- system.file("extdata/combined/", package = "MQmetrics")
MQCombined <- make_MQCombined(MQPathCombined)
PlotPTM(MQCombined)

[Package MQmetrics version 1.0.0 Index]