PlotAcquisitionCycle {MQmetrics} | R Documentation |
Acquisition Cycle and MS/MS
PlotAcquisitionCycle(MQCombined, palette = "Set2", plots_per_page = 5)
MQCombined |
Object list containing all the files from the MaxQuant
output. It is the result from using |
palette |
The palette from the Package RColorBrewer. By default is 'Set2'. |
plots_per_page |
Establish the maximum number of plots per page. |
Two plots per sample, one with the cycle tyme vs retention time, and MS/MS count vs retention time.
MQPathCombined <- system.file("extdata/combined/", package = "MQmetrics") MQCombined <- make_MQCombined(MQPathCombined) PlotAcquisitionCycle(MQCombined)