PlotIdentificationType {MQmetrics}R Documentation

Protein and Peptide Identification type.

Description

Protein and Peptide Identification type.

Usage

PlotIdentificationType(
  MQCombined,
  long_names = FALSE,
  sep_names = NULL,
  palette = "Set2"
)

Arguments

MQCombined

Object list containing all the files from the MaxQuant output. It is the result from using make_MQCombined.

long_names

If TRUE, samples having long names will be considered, and the name will be split by sep_names. By default = FALSE.

sep_names

If long_names is TRUE, sep_names has to be selected. Samples names will be split. By default is NULL.

palette

The palette from the Package RColorBrewer. By default is 'Set2'.

Value

Plots the compares of the protein and peptide identification of each sample. It will only work if in MaxQuant the Match Between Run was selected.

Examples

MQPathCombined <- system.file("extdata/combined/", package = "MQmetrics")
MQCombined <- make_MQCombined(MQPathCombined)
PlotIdentificationType(MQCombined)

[Package MQmetrics version 1.0.0 Index]