create_mofa_from_SingleCellExperiment {MOFA2}R Documentation

create a MOFA object from a SingleCellExperiment object

Description

Method to create a MOFA object from a SingleCellExperiment object

Usage

create_mofa_from_SingleCellExperiment(
  sce,
  groups = NULL,
  assay = "logcounts",
  extract_metadata = FALSE
)

Arguments

sce

SingleCellExperiment object

groups

a string specifying column name of the colData to use it as a group variable. Alternatively, a character vector with group assignment for every sample. Default is NULL (no group structure).

assay

assay to use, default is logcounts.

extract_metadata

logical indicating whether to incorporate the metadata from the SingleCellExperiment object into the MOFA object

Value

Returns an untrained MOFA object


[Package MOFA2 version 1.2.2 Index]