ReadRRA {MAGeCKFlute} | R Documentation |
Read gene summary file in MAGeCK-RRA results
ReadRRA(gene_summary, score = c("lfc", "rra")[1])
gene_summary |
A data frame or a file path to gene summary file generated by MAGeCK-RRA. |
score |
"lfc" (default) or "rra", specifying the score type. |
If the score type is equal to lfc, then LFC will be returned. If the score type is rra, the log10 transformed RRA score will be returned.
A data frame including three columns, including "id", "LFC" and "FDR".
Wubing Zhang
file1 = file.path(system.file("extdata", package = "MAGeCKFlute"), "testdata/rra.gene_summary.txt") gdata = ReadRRA(file1) head(gdata)