generate_mappings {KEGGlincs} | R Documentation |
Generates an object that can be converted to a JSON file
and subsequently applied to the graph for the markup specified by this
package and the layout mirroring KEGG.
Intended for use within cyto_vis
generate_mappings(style_name, map_edge_width, edge_width_attribute, min_score, max_score)
style_name |
An argument to name style; when used inside
of |
map_edge_width |
A logical indicator; if FALSE no continuous mapping of edge width will be applied |
edge_width_attribute |
The attribute that will be used for edge width; if data is not added or the attribute is not part of the graphing information, the edge width will default to 1. |
min_score |
The minimum attribute value for the column used to map edge width |
max_score |
The maximum attribute value for the column used to map edge width |
A list that can be converted to a JSON file to apply desired style/layout in Cytoscape
style.name = "myKEGGstyle" mappings <- generate_mappings(style.name, FALSE)