get_KGML {KEGGlincs} | R Documentation |
Download and parse KGML file
get_KGML(pathwayid, get_if_no_edges = FALSE)
pathwayid |
A KEGG pathway ID of the form "hsa12345" (only human pathways currently) |
get_if_no_edges |
A logical indicator; if pathway has no edges returns null value if set to TRUE |
an object of Formal class KEGGPathway
mtor_KGML <- get_KGML("hsa04150") # Some pathways contain only node information; since the purpose of this # package is to explore pathways in an edge-focused manner, the default # options return a warning message instead of a parsed KGML file if the # input pathway has no edges. ribosome_KGML <- get_KGML("hsa03020") ribosome_KGML <- get_KGML("hsa03020", get_if_no_edges = TRUE)