get_UTR3CDS {InPAS}R Documentation

Get 3' UTRs and their last CDS regions based on CP sites

Description

Get 3' UTRs and their last CDS regions based on CP sites

Usage

get_UTR3CDS(sqlite_db, chr.utr3, BPPARAM = NULL)

Arguments

sqlite_db

A path to the SQLite database for InPAS, i.e. the output of setup_sqlitedb().

chr.utr3

An object of GenomicRanges::GRanges, specifying UTR3 GRanges for a chromosome. It must be one element of an output of extract_UTR3Anno().

BPPARAM

an optional BiocParallel::BiocParallelParam instance determining the parallel back-end to be used during evaluation, or a list of BiocParallelParam instances, to be applied in sequence for nested calls to bplapply. It can be set to NULL or bpparam()

Value

An object of GenomicRanges::GRanges containing GRanges for UTRs with alternative CP sites and the corresponding last CDSs.

Author(s)

Jianhong Ou, Haibo Liu


[Package InPAS version 2.0.0 Index]