PlotNetwork {IRISFGM} | R Documentation |
PlotNetwork
PlotNetwork This function is to plot the network for selected biclusters to show the genes (or cells) overlapping relations.
PlotNetwork(object, ...) ## S4 method for signature 'IRISFGM' PlotNetwork( object, edge.by = "gene", lay.out = "linear", N.bicluster = seq_len(20) )
object |
Input IRIS-FGM object. |
... |
other arguments passed to methods |
edge.by |
Should be "cell" or by "gene," indicating nodes label. The default value is by "gene." |
lay.out |
Should be one type of layouts to show nodes' arrangement, including 'linear'(default), 'star', 'circle', 'gem', 'dh', 'graphopt', 'grid', 'mds', 'randomly', 'fr', 'kk', 'drl', 'lgl'. |
N.bicluster |
Should be two integers indicating the number of two biclusters. |
It will generate a global network regarding overlapping genes or cells.
data(example_object) PlotNetwork(example_object, N.bicluster =c(1:20))