FindMarker {IRISFGM}R Documentation

FindMarker

Description

FindMarker

Find marker based on DEsingle method Find marker based on DEsingle method

Usage

FindMarker(object, ...)

.findMarker(object, SimpleResult = TRUE, FDR = 0.05)

## S4 method for signature 'IRISFGM'
FindMarker(object, SimpleResult = TRUE, FDR = 0.05)

Arguments

object

input IRISFGM object

...

other arguments passed to methods

SimpleResult

marker gene only output log fold change (LFC), p-value, and adjusted p-value.

FDR

a number to specify the threshold of FDR, default by 0.05

Value

It will return differentially expressed gene based on DEsingle method.

Examples

data(example_object)
# It is an interactive function which requires user to provide the preferred cell labels.
# example_object <- FindMarker(example_object)

[Package IRISFGM version 1.0.0 Index]