modelSelection {INSPEcT} | R Documentation |
Method to visualize the criteria used to assess variability of rates.
modelSelection(object) ## S4 method for signature 'INSPEcT' modelSelection(object) ## S4 method for signature 'INSPEcT_model' modelSelection(object)
object |
An object of class INSPEcT or INSPEcT_model |
modelSelection 'aic' compares nested models closest to the one with lowest AIC, 'llr' compares all nested models, 'hib' is a mix between the previous two. (default 'aic')
preferPValue a logical, if TRUE (default) limit the search for best models among the ones with succeded the goodness of fit test.
padj a logical, if TRUE (default) correct the p-values for multiple testing
goodness_of_fit a numeric, the threshold for the goodness-of-fit test (default = .1)
variability a numeric, a vector with the thresholds for the variability test (one threshold for each rate, default = c('s'=05, 'p'=.05, 'd'=.05))
limitModelComplexity a logical that limits the complexity of the function used to describe dynamics to the length of the time-course (default = FALSE)
nascentInspObj10 <- readRDS(system.file(package='INSPEcT', 'nascentInspObj10.rds')) modelSelection(nascentInspObj10)