getAlleles {IMPCdata} | R Documentation |
Returns alleles (MGI IDs or temporary IDs if the MGI ID is not assigned yet) that are processed for a specified combination of parameter, procedure, pipeline and phenotyping center. Temporary allele ID starts with "NULL".
getAlleles(PhenCenterName=NULL,PipelineID=NULL,ProcedureID=NULL, ParameterID=NULL,StrainID=NULL)
PhenCenterName |
IMPC phenotyping center; mandatory argument |
PipelineID |
IMPC pipeline ID; mandatory argument |
ProcedureID |
IMPC procedure ID; mandatory argument |
ParameterID |
IMPC parameter ID; mandatory argument |
StrainID |
IMPC strain ID; optional argument |
Returns the list of IMPC alleles (IDS of alleles) that are processed measuring specified parameter within the procedure in the pipeline run by phenotyping center.
Natalja Kurbatova, Jeremy Mason
listAlleles <- getAlleles("RBRC","IMPC_001","IMPC_GRS_001","IMPC_GRS_003_001") for (alleleIndex in 1:min(length(listAlleles), 5)) { print(paste(listAlleles[alleleIndex],"-", getName("allele_accession_id","allele_symbol", listAlleles[alleleIndex]))) }