ExonsCluster {IMAS} | R Documentation |
This function constructs representative Exons.
ExonsCluster(ASdb,GTFdb,Ncor=1,txTable=NULL)
ASdb |
An ASdb object containing "SplicingModel" from the |
GTFdb |
A TxDb object in the GenomicFeatures package. |
Ncor |
The number of cores for multi-threads function. |
txTable |
The matrix of transcripts including transcript IDs, Ensembl gene names, Ensembl transcript names, transcript start sites, and transcript end sites. |
ASdb containing representative exons.
Seonggyun Han, Younghee Lee
sampleDB <- system.file("extdata", "sampleDB", package="IMAS") transdb <- loadDb(sampleDB) ## Not run: ASdb <- Splicingfinder(transdb,Ncor=1) ASdb <- ExonsCluster(ASdb,transdb) ## End(Not run)