htx_app {HumanTranscriptomeCompendium}R Documentation

explore SRA metadata

Description

explore SRA metadata

Usage

htx_app()

Value

a SummarizedExperiment can be requested through an event

Note

This function deals with extraction of compendium elements. The overall scope is determined by HumanTranscriptomeCompendium::studTable which is the list of all studies with taxon 9606, strategy RNA-seq, source transcriptomic. Some studies will not have experiments in the compendium, and if such are selected, a warning will be generated in the session.

Examples

if (interactive()) htx_app()

[Package HumanTranscriptomeCompendium version 1.8.3 Index]