pmMultiBarplot {HiLDA} | R Documentation |
Plot both mutation signatures and their mutational exposures from pmsignature output for more than two groups
pmMultiBarplot(inputG, inputParam, sigOrder = NULL, groupIndices, sortSampleNum = TRUE, charSize = 3)
inputG |
a MutationFeatureData S4 class output by the pmsignature. |
inputParam |
a estimatedParameters S4 class output by the pmsignature. |
sigOrder |
the order of signatures if needed (default: NULL). |
groupIndices |
a vector of group indicators. |
sortSampleNum |
an indictor variable on whether samples are sorted by the number of mutations (default: TRUE). |
charSize |
the size of the character on the signature plot (default: 3) |
a list of the signature plot and the mean difference plot.
load(system.file("extdata/sample.rdata", package="HiLDA")) Param <- pmgetSignature(G, K = 3) pmPlots <- pmMultiBarplot(G, Param, groupIndices=c(1, rep(2,3), rep(3,6))) cowplot::plot_grid(pmPlots$sigPlot, pmPlots$propPlot, rel_widths = c(1,3))