hippo_feature_heatmap {HIPPO} | R Documentation |
HIPPO's feature heatmap
hippo_feature_heatmap( sce, switch_to_hgnc = FALSE, ref = NA, top.n = 50, kk = 2, plottitle = "" )
sce |
SingleCellExperiment object with hippo |
switch_to_hgnc |
if the current gene names are ensemble ids, and would like to switch to hgnc |
ref |
a data frame with columns 'hgnc' and 'ensg' to match each other, only required when switch_to_hgnc is set to TRUE |
top.n |
number of markers to return |
kk |
integer for the round of clustering that you'd like to see result. Default is 2 |
plottitle |
title for the plot |
list of differential expression result
data(toydata) set.seed(20200321) toydata = hippo(toydata,K = 10,z_threshold = 1,outlier_proportion = 0.01) hippo_feature_heatmap(toydata)