readDccFile {GeomxTools}R Documentation

Read DCC File

Description

Read a NanoString GeoMx Digital Count Conversion (DCC) file.

Usage

readDccFile(file)

Arguments

file

A character string containing the path to the DCC file.

Value

A list object with two elements:

"Header"

a data.frame object containing the protocol and sequencing information.

"Code_Summary"

a data.frame object containing the gene probe counts.

Author(s)

Zhi Yang & Nicole Ortogero

See Also

readNanoStringGeomxSet

Examples

datadir <- system.file("extdata", "DSP_NGS_Example_Data",
                       package="GeomxTools")
dccFiles <- dir(datadir, pattern=".dcc$", full.names=TRUE)
dccData <- sapply(dccFiles, readDccFile, simplify = FALSE)

[Package GeomxTools version 1.0.0 Index]